Paste your alignment (FASTA format):

...or choose a local file for upload (FASTA format):
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Define groups (example: "1-26;27-35,43-50;36-42")...
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force realignment of subsets after splitting even if the source dataset was already aligned
colorize the histogram in consensus colors
height of the conservation-rate histogram

Viewing options... (help)

None / Default 20 aa HP model Chemical/structural properties Chemical/structural properties #2 Murphy et al. 15 letters Murphy et al. 10 letters Murphy et al. 8 letters Murphy et al. 4 letters Murphy et al. 2 letters Wang & Wang 5 letters Wang & Wang variant 5 letters Wang & Wang 3 letters Wang & Wang 2 letters Li et al. 10 letters Li et al. 5 letters Li et al. 4 letters Li et al. 3 letters choose an alphabet (info about alphabets)

If a reduced alphabet (instead of "default 20 aa") is chosen, VisCoSe additionally computes a translated alignment and consensus sequence. The 20 aa consensus is presented beneath the translated consensus (including conservation graph) for better illustration of both sequences.